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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
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Answer: Subsetting data verses contrasts [DESeq2]?
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ATpoint
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This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
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Mariami
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Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
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Mariami
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Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N.
My concern came from the o…
Answer: Bulk RNAseq analysis for
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All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
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